Publications List

  1. Manavathi B, Dey O, Gajulapalli VN, Bhatia RS, Bugide S, Kumar Rakesh (2013) Derailed estrogen signaling and breast cancer: an authentic couple.; Endocr Rev.;34(1):1-32.
  2. Bradley ShafferH, Patrick Minx, Daniel E Warren, Andrew M Shedlock, Robert C Thomson, Nicole Valenzuela, John Abramyan, Chris T Amemiya, Daleen Badenhorst, Kyle K Biggar, Glen M Borchert, Christopher W Botka, Rachel M Bowden, Edward L Braun, Anne M Bronikowski, Benoit G Bruneau, Leslie T Buck, Blanche Capel, Todd A Castoe, Mike Czerwinski, Kim D Delehaunty, Scott V Edwards, Catrina C Fronick, Matthew K Fujita, Lucinda Fulton, Tina A Graves, Richard E Green, Wilfried Haerty, RamkumarHariharan, Omar Hernandez et al, (2013) The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage, Genome Biol;14(3):R28, doi:10.1186/gb-2013-14-3-r28.,
  3. David D, Nair SA, Pillai MR, (2013) Smurf E3 ubiquitin ligases at the cross roads of oncogenesis and tumor suppression.; Biochimica Biophysica Acta (BBA) - Reviews onCancer;1835(1):119-28.
  4. Pakala SB, Rayala SK, Wang RA, Ohshiro K, Mudvari P, Reddy SD, Zheng Y, Pires R, Casimiro S, Pillai MR, Costa L, Kumar R, (2013) MTA1 Promotes STAT3 Transcription and Pulmonary Metastasis in Breast Cancer, Cancer Res.;73(12):3761-70. doi: 10.1158/0008-5472.CAN-12-3998.
  5. Balachandran S Vinod, Tessy T Maliekal and Ruby John Anto, (2013) Phytochemical As Chemosensitizers: From Molecular Mechanism to Clinical Significance, Antioxid Redox Signal.;18(11):1307-48.,
  6. Sutapa Sinha, Krishnendu Pal, Ahmed Elkhanany, Shamit Dutta, Ying Cao, Gourish Mondal, Seethalakshmi Iyer, Veena Somasundaram, Fergus J. Couch, Viji Shridhar, Resham Bhattacharya, Debabrata Mukhopadhyay, Priya Srinivas, (2013) Plumbagin inhibits tumorigenesis and angiogenesis of ovarian cancer cells in vivo, Int J Cancer;132(5):1201-12.
  7. Karunakaran SC, Babu PS, Madhuri B, Marydasan B, Paul AK, Nair AS, Rao KS, Srinivasan A, Chandrashekar TK, Rao ChM, Pillai R, Ramaiah D, (2013) In vitro demonstration of apoptosis mediated photodynamic activity and NIR nucleus imaging through a novel porphyrin, ACS ChemBiol;8(1):127-32.
  8. Vinod BS, Antony J, Nair HH, Puliyappadamba VT, Saikia M, Shyam Narayanan S, Bevin A, John Anto R. Seervi M, Sobhan PK, Joseph J, Ann Mathew K, Santhoshkumar TR, (2013) Mechanistic evaluation of the signaling events regulating curcumin-mediated chemosensitization of breast cancer cells to 5-fluorouracil, Cell Death Dis. ;4:e505.
  9. Seervi M, Sobhan PK, Joseph J, Ann Mathew K, Santhoshkumar TR, (2013) ERO1α-dependent endoplasmic reticulum-mitochondrial calcium flux contributes to ER stress and mitochondrial permeabilization by procaspase-activating compound-1 (PAC-1), Cell Death Dis;4:e968. .
  10. Asha S, Nisha Joy, Soniya E V, (2013) Insilico Charecterisation and Phylogenetic Analysis of Two Evolutionary miRNAs (miR166 and miR171) from Black Pepper (Piper nigram L.), Plant. Mol. Biol. Rep, 31: 707-718.
  11. Hong J, He H, Bui P, Ryba-White B, Rumi MA, Soares MJ, Dutta D, Paul S, Kawamata M, Ochiya T, Ying QL, Rajanahalli P, Weiss ML, (2013) A focused microarray for screening rat embryonic stem cell lines, Stem Cells Dev;22(3):431-43.
  12. Resmi MS, Verma P, Gokhale RS, Soniya EV, (2013)  Identification and characterization of a Type III polyketide synthase involved in quinolone alkaloid biosynthesis from Aeglemarmelos Corr., Journal of Biological Chemistry, 288, 7271-7281.
  13. Rajendran G , Dutta D, Hong J, Paul A, Saha B, Mahato B, Ray S, Home P, Ganguly A, Weiss ML, Paul S, (2013) Inhibition of protein kinase C signaling maintains rat embryonic stem cell pluripotency, Journal of Biological Chemistry. 288(34):24351-62.
  14. R. Kunnambath, D. Ravindran, R.R. Kumar, R. Muwonge, R.M. Pillai, (2013) Management of Radiation-Induced Oral Mucositis With an Herbal Mouthwash, International Journal of Radiation Oncology, Volume 87, Issue 2, Supplement, Pages S143–S144.
  15. Richard V, Sebastian P, Nair MG, Nair SN, Malieckal TT, Santhosh Kumar TR, Pillai MR, (2013) Multiple drug resistant, tumorigenic stem-like cells in oral cancer, Cancer Lett;338(2):300-16.
  16. Srivastava N, Venugopalan V, Divya MS, Rasheed VA, James J, Narayan KS, (2013) Neuronal Differentiation of Embryonic Stem Cell Derived Neuronal Progenitors Can Be Regulated by Stretchable Conducting Polymers, Tissue Eng Part A;19(17-18):1984-93.
  17. Vineet Kumar Maurya, Rajesh Kumar Jha, Vijay Kumar, Anubha Joshi, Sangappa Chadchan, Jasna Jagan Mohan, and Malini Laloraya, (2013) Transforming Growth Factor-Beta 1 (TGF-B1) Liberation from Its Latent Complex During Embryo Implantation and Its Regulation by Estradiol in Mouse, Biology of Reproduction, 89(4):84, 1–17.
  18. Thomas SA, Vasudevan S, Thamkachy R, Lekshmi SU, Santhoshkumar TR, Rajasekharan KN, Sengupta S, (2013) Upregulation of DR5 receptor by the diaminothiazole DAT1 [4-amino-5-benzoyl-2-(4-methoxy phenyl amino) thiazole] triggers an independent extrinsic pathway of apoptosis in colon cancer cells with compromised pro and antiapoptotic proteins, Apoptosis;18(6):713-26.
  19. Siyad MA, Vinod Kumar GS, (2013) PEGylateddendrimer polystyrene support: synthesis, characterisation and evaluation of biologically active peptides, Amino Acids. 44(3):947-59.
  20. Nisha Joy, Srinivasan Asha, Vijayan Mallika, Soniya E V, (2013) De novo Transcriptome Sequencing Reveals a Considerable Bias in the Incidence of Simple Sequence Repeats towards the Downstream of ‘Pre- miRNAs’ of Black Pepper, PLoS One.  8 (3): e56694.
  21. Praveen K. Sobhan,  Mahendra Seervi, Lokesh Deb,  Saneesh Varghese,  Anjana Soman, Jeena Joseph,  Krupa Ann Mathew, Godi Raghu, George Thomas, Sreekumar E,  Manjula S,  Santosh Kumar T. R, (2013) Calpain and Reactive Oxygen Species Targets Bax for Mitochondrial Permeabilisation and Caspase Activation in Zerumbone Induced Apoptosis, PLoS One;8(4):e59350.
  22. Hariharan R, Simon R, Pillai MR, Taylor TD, (2013) Comparative analysis of DNA word abundances in four yeast genomes using a novel statistical background model, PLoS One 8(3): e58038.
  23. Nair K L, Jagadeeshan S, Nair S A, Kumar GS, (2013) Folic Acid Conjugated δ-Valerolactone-Poly(ethylene glycol) Based Triblock Copolymer as a Promising Carrier for Targeted Doxorubicin Delivery, PLoS One;8(8):e70697.
  24. Rachy Abraham, Prashant Mudaliar, Aiswaria Padmanabhan, Easwaran Sreekumar, (2013) Induction of Cytopathogenicity in Human Glioblastoma Cells by Chikungunya Virus, Plos One,8(9):e75854.
  25. Shashikala S, Kumar R, Thomas NE, Sivadasan D, James J, Sengupta S, (2013) Fodrin in Centrosomes: Implication of a Role of Fodrin in the Transport of Gamma-Tubulin Complex in Brain, PLoS One;8(10):e76613.
  26. Padmanabhan Jayanthi Vivek, Narendra Tuteja, Eppurathu Vasudevan Soniya, (2013) CDPK1 from Ginger Promotes Salinity and Drought Stress Tolerance without Yield Penalty by Improving Growth and Photosynthesis in Nicotianatabacum, PLoS One.; 8(10): e76392.
  27. Balan S, Sathyan S, Radha SK, Joseph V, Radhakrishnan K, Banerjee M, (2013) GABRG2, rs211037 is associated with epilepsy susceptibility, but not with antiepileptic drug resistance and febrile seizures, Pharmacogenet Genomics;23(11):605-10.
  28. Sudha, C.G , Sherina, T.V, AnuAnand, V.P, Reji, J.V, Padmesh, P, Soniya, E.V(2013) Agrobacterium rhizogenes mediated transformation of the medicinal plant Decalepisarayalpathra and production of 2-hydroxy-4-methoxy benzaldehyde.; Plant Cell, Tissue and Organ Culture.;112: 217-226.
  29. Siyad MA, Kumar GS. (2013) Synthetic evaluation of disulphide-bonded sarafotoxin on a poly(oxy ether) grafted dendrimeric poly(alkyl amine) support for polymer assisted organic synthesis, Org BiomolChem;11(29):4860-70.
  30. P PNampi, CC Kartha, Gin Jose, Anil Kumar Pallikkaveedu Rajan, Anilkumar Thapasimuthu, Harikrishna Varma, (2013) Sol-Gel Nanoporous Silica As Substrate For Immobilization Of Conjugated Biomolecules For Application As Fluorescence Resonance Energy Transfer (FRET) Based Biosensor, Sensors and Actuators B: Chemical, Volume 185,  Pages 252–257.
  31. Dhanasooraj D, Kumar RA, Mundayoor S, (2013) Vaccine delivery system for tuberculosis based on nano-sized hepatitis B virus core protein particles, Int J Nanomedicine;8:835-43.
  32. Vadakkan MV, Annapoorna K, Sivakumar KC, Mundayoor S, Kumar GSV, (2013) Dry powder cationic lipo polymeric nanomicelles inhalation for targeted delivery of antitubercular drug to alveolar macrophage,            Int J Nanomedicine;8:2871-8.
  33. IshaChauhan, Beena VT, Lekshmy Srinivas,Sanish Sathyan, Moinak Banerjee, (2013) Association of cytokine gene polymorphisms with oral lichen planus in Malayalam speaking ethnicity from South India (Kerala), J Interferon Cytokine Res;33(8):420-7.
  34. Cory B Giles, Reshmi Girija-Devi, Mikhail G Dozmorov, Jonathan D Wren, (2013)  mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis, BMC Bioinformatics, 14(Suppl 14):S17.
  35. Thasni KA, Ratheesh kumar T, Rojini G, Sivakumar KC, Rakesh Sathish Nair, Srinivas G, Asoke Banerji, Veena Somasundaram, Priya Srinivas, (2013) Structure activity relationship of Plumbagin in BRCA1 related Cancer Cells, Mol Carcinog.;52(5):392-403.
  36. Ramesha BT, Suma HK, Senthilkumar U, Priti V, Ravikanth G, Vasudeva R, Kumar TR, Ganeshaiah KN, Shaanker, (2013) New plant sources of the anti-cancer alkaloid, camptothecine from the Icacinaceae taxa, India, Phytomedicine;20(6):521-7.
  37. Horvath A1, Pakala SB, Mudvari P, Reddy SD, Ohshiro K, Casimiro S, Pires R, Fuqua SA, Toi M, Costa L, Nair SS, Sukumar S, Kumar Rakesh (2013)Novel insights into breast cancer genetic variance through RNA sequencing.;Sci Rep.;3:2256. doi: 10.1038/srep02256.
  38. Vinitha Richard, Madhumathy G. Nair, T. R. Santhosh Kumar, and M. RadhakrishnaPillai, (2013), Side Population Cells as Prototype of Chemoresistant, Tumor-Initiating Cells, (Review Article), BioMed Research International, Volume 2013, Article ID 517237, 8 pages, http://dx.doi.org/10.1155/2013/517237.
  39. Joseph BV, Soman S, Radhakrishnan I, Hill V, Dhanasooraj D, Ajay Kumar R, Rastogi N, Mundayoor S, (2013) Molecular epidemiology of Mycobacterium tuberculosis isolates from Kerala, India using IS6110-RFLP, spoligotyping and MIRU-VNTRs, Infection, Genetics and Evolution, Volume 16, Pages 157–164.
  40. Santhi WS, Prathibha R, Charles S, Anurup KG, Reshmi G, Ramachandran S, Jissa VT, Sebastian P, RadhakrishnaPillai M, (2013) Oncogenic microRNAs as biomarkers of oral tumorigenesis and minimal residual disease, Oral Oncology, Volume 49, Issue 6, Pages 567–575.
  41. Dutta D, (2013) Signaling pathways dictating pluripotency in embryonic stem cells, Int. J. Dev. Biol,  57: 667.
  42. Sathyan S, Koshy L, SaradaLekshmi KR, Easwer HV, Premkumar S, Alapatt JP, Nair S, Bhattacharya RN, Banerjee M, (2013) Lack of association of Lysyl oxidase (LOX) gene polymorphisms with intracranial aneurysm in a south Indian population. MolBiol Rep.;40(10):5869-74.
  43. B.Sadia Khan,  Anil Kumar, Divya MP,  Sabu Thomas,  Deepa Harichandran and Shamsul Karim, (2013) Fatal non-O1/ non-O139 V.cholerae Septicaemia in A Patient with Chronic Liver Disease: A Case Report and Review of Literature, Journal of Medical Microbiology 62, 917–921.  
  44. Nair RA, Thomas G., (2013) Molecular characterization of ZzR1 resistance gene from Zingiberzerumbet with potential for imparting Pythiumaph anidermatum resistance in ginger, Gene.;516(1):58-65.
  45. Balan, Shabeesh, Sarada Lekshmi, Sanish Sathyan, Joseph Vijai, Moinak Banerjee, and Kurupath Radakrishnan, (2013) Major vault protein (MVP) gene polymorphisms and drug resistance in mesial temporal lobe epilepsy with hippocampal sclerosis.Gene, Volume 526, Issue 2, Pages 449–453.
  46. Anoop Manakkadan, Iype Joseph, Raji Rajendran Prasanna, Riaz Ismail kunju, Lalitha Kailas, Easwaran Sreekumar, (2013) Lineage shift in Indian strains of Dengue virus serotype-3 (Genotype III), evidenced by detection of lineage IV strains in clinical cases from Kerala, Virology Journal,  10:37.
  47. SiyadM A and G.S. Vinod Kumar, (2013) Synthesis, Characterization, and Application of Bisphenol A Glycerolate Dimethacrylate Cross-Linked Polystyrene (PS-BGD): A Novel Support for Gel Phase Peptide Synthesis, Current Organic Synthesis,  10 (2):318-327.
  48. Kumar, Mahesh M, Adurthi, Sreenivas , Surya Ramachandran, Mukherjee, Geetashree, Joy, Omana , Krishnamurthy, H., Krishna, Sudhir Bafna, U. D.  Uma, Devi K. Jayshree, R. S (2013) Cervical Cancer Toll-Like Receptors 7, 8, and 9 Expression and Function in Primary Human Cervical Cancer Langerhans Cells: Evidence of Anergy.; International Journal of Gynecological Cancer.; 23(1):184–192.
  49. Rebello S, Asok AK, Joseph SV, Joseph BV, Jose L, Mundayoor S, M S J, (2013)Bioconversion of sodium dodecyl sulphate to rhamnolipid by Pseudomonas aeruginosa: a novel and cost-effective production strategy, ApplBiochemBiotechnol.;169(2):418-30.
  50. Thalamuthu S, B. Annaraj, Smreti Vasudevan, Suparna Sengupta & M.A. Neelakantan, (2013) DNA binding, nuclease, and colon cancer cell inhibitory activity of a Cu(II) complex of a thiazolidine-4-carboxylic acid derivative, Journal of Coordination Chemistry, Volume 66, Issue 10, pages 1805-1820.
  51. Srinivas  K. P, Sreekanth Reddy M. Hema P. Sreenivasulu (2013) Multiplex RT-PCR for parallel detection of three RNA viruses associated with stripe and mosaic diseases of sorghum in India. European Journal of Plant Pathology.;137(2): 211–215.
  52. Kumar SN, Nambisan B, Kumar BS, Vasudevan NG, Mohandas C, Cheriyan VT, Anto RJ,  (2013)Antioxidant and anticancer activity of 3,5-dihydroxy-4-isopropylstilbene produced by Bacillus sp. N strain isolated from entomopathogenic nematode, Arch Pharm Res. pp 1-11.
  53. Mohanlal, S., Maney, S.K, Santhoshkumar, T.R., Jayalekshmy, A, (2013)Tricin 4′-O-(erythro-β-guaiacylglyceryl) ether and tricin 4′-O-(threo-β-guaiacylglyceryl) ether isolated from Njavara (Oryza sativa L. var. Njavara), induce apoptosis in multiple tumor cells by mitochondrial pathway, J. Nat. Med;67(3):528-33. 
  54. Murty  M. S. R., B. Ramalingeswara Rao, Mohana Rao Katiki, Lekshmi R. Nath & Ruby John Anto, (2013) Synthesis of piperazinyl benzothiazole / benzoxazole derivatives coupled with 1,3,4 oxadiazole-2-thiol: novel hybrid heterocycles as anticancer agents, Med Chem Res, 22:4980-4991.
  55. Krishnan A, Gopinath VR, Johnson A, Nair SA, Pillai MR, (2013) Cell-cycle analysis and micronuclei frequency reveals G0/G1 blockers as weak micronuclei inducers, Drug ChemToxicol.;36(2):249-54.
  56. James P, Girijadevi R, Charles S, Pillai MR, (2013) Methfinder - A software package for prediction of human tissue - specific methylation status of CpG islands, Bioinformation 9 (1): 61 – 64.
  57. Janardhanan A, Roshmi T, Rintu T Varghese, Soniya E V, Jyothis Mathew, Radhakrishnan E K,  (2013)Biosynthesis of silver nanoparticles by a Bacillus sp. of marine origin, Materials Science-Poland, 31(2), pp. 173-179.
  58. Gupta PN, Balakrishnan KG, Kartha CC, (2013)Decreased Protein C Levels in Endomyocardial Fibrosis: The Possible Significance, J Blood Disorders Transf; 4:170.
  59. Rakesh Kumar, Anelia Horvath, Raja Mazumder, Masakazu Toi, Fumiaki Sato, Pillai MR, Luis Costa, Maria Carmo-Fonseca, Stefan Knapp, AmitDutt, Sudeep Gupta, RajendraBadwe, (2013)The Global Cancer Genomics Consortium’s Second Annual Symposium: Genomics Medicine in Cancer Research. The Global Cancer Genomics Consortium’s Second Annual Symposium: Genomics Medicine in Cancer Research, Genes & Cancer, 4(5-6) 196– 200.
  60. Jain N, R Joseph, S Balan, R Arun, M Banerjee, (2013)Association of interleukin-4 and interleukin-17F polymorphisms in periodontitis in Dravidian ethnicity, Indian Journal of Human Genetics; 19( 1): 58.
  61. Echi, P. C, Suresh, K. U, George S., Ratheesh, R. V, Vinitha, M. R, Ejere, V. C.1,Iyaji, F. O. and Nnamonu, E. I, (2013) Contribution towards the development of a DNA barcode reference library for West African mammals, African  Journal of Biotechnology  12(48),  6704-6708.
  62. Biljo V. Joseph, Smitha Soman, Véronique Hill, R. Ajay Kumar, Nalin Rastogi, Sathish Mundayoor, (2013) Efficient discrimination by MIRU-VNTRs of Mycobacterium tuberculosis clinical isolates belonging to the predominant SIT11/EAI3-IND ancestral genotypic lineage in Kerala, India, International Journal of Mycobacteriology, Volume 2, Issue 4 , Pages 244-247.
  63. Karthika S and Sabu Thomas, (2013) Biotechnology and Environmental Conservation – A Perspective, Journal of Basic and Applied Biology. 8(1):26-31.
  64. Wilson Peter A and Sabu Thomas, (2013) Diversity and Bioprospecting potential of bacteria isolated from the Arctic: A preliminary study, Mapana Journal of Science. 12(4):19-28.
  65. Kshemada K, Kartha CC and Mehta JL, (2013) Forensic Sciences and growth of Cardiology, ( Editorial), J Forensic Res; Volume 5 • Issue 1 • 1000e115. 

Book Chapter

  1. Asha Poorna C, M.S. Resmi and E.V. Soniya (2013) In vitro Antioxidant Analysis and the DNA Damage Protective Activity of Leaf Extract of the Excoecariaagallocha Linn Mangrove Plant,;Int."Agricultural Chemistry",Vol.1, Chapter 7, 4:1-6,  book edited by Margarita Stoytcheva and RoumenZlatev, ISBN 978-953-51-1026-2, Published: February 20, 2013 DOI: 10.5772/55416.
  2. SreekanthCN, Smitha VB, Arun Kumar TT, N P Anto, VT Cheriyan, Vineshkumar TP, SG Menon, SD Ravichandran and Ruby John Anto, (2013) A Potent Candidate to be Evaluated as a Chemosensitizer in Paclitaxel Chemotherapy Against Cervical Cancer, In: Perspectives in Cancer Prevention-Translational Cancer Research.P Sudhakaran P, Oommen V, Pillai, MR (Eds.). Pubd: Springer; pp 21-43.

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