Publications List

  • Rajan A, Varghese GR, Yadev I, Anandan J, Latha NR, Patra D, Krishnan N, Kuppusamy K, Warrier AV, Bhushan S, Nadhan R, Ram Kumar RM, Srinivas P. Modulation of BRCA1 mediated DNA damage repair by deregulated ER-α signaling in breast cancers. Am J Cancer Res. 2022 Jan 15;12(1):17-47. PMID: 35141003; PMCID: PMC8822286.
  • Nelson-Sathi S, Umasankar PK, Sreekumar E, Nair RR, Joseph I, Nori SRC, Philip JS, Prasad R, Navyasree KV, Ramesh S, Pillai H, Ghosh S, Santosh Kumar TR, Pillai MR. Mutational landscape and in silico structure models of SARS-CoV-2 spike receptor binding domain reveal key molecular determinants for virus-host interaction. BMC Mol Cell Biol. 2022 Jan 7;23(1):2. doi: 10.1186/s12860-021-00403-4. PMID: 34991443; PMCID: PMC8736301.
  • Banerjee M. Pharmacoepigenomics: a key determinant in resolving epigenomic parameters in pathogenesis and treatment response in complex diseases. Pharmacogenomics. 2022 Jan;23(2):81-84. doi: 10.2217/pgs-2021-0140. Epub 2021 Nov 29. PMID: 34842441.
  • Jain P, Mazumder M, Pradeep KR, Viswanatha R, Pati SK, Narayana C. Polaronic Signatures in Doped and Undoped Cesium Lead Halide Perovskite Nanocrystals through a Photoinduced Raman Mode. ACS Appl Mater Interfaces. 2022 Jan 18. doi: 10.1021/acsami.1c20321. Epub ahead of print. PMID: 35041391.
  • G Mohan Shankar, Swetha M, Keerthana CK, Rayginia TP, Anto RJ. Cancer Chemoprevention: A Strategic Approach Using Phytochemicals. Front Pharmacol. 2022 Jan 13;12:809308. doi: 10.3389/fphar.2021.809308. PMID: 35095521; PMCID: PMC8793885.
  • Vini R, Azeez JM, Remadevi V, Susmi TR, Ayswarya RS, Sujatha AS, Muraleedharan P, Lathika LM, Sreeharshan S. Urolithins: The Colon Microbiota Metabolites as Endocrine Modulators: Prospects and Perspectives. Front Nutr. 2022 Feb 2;8:800990. doi: 10.3389/fnut.2021.800990. PMID: 35187021; PMCID: PMC8849129.
  • Varadarajan SN, Mathew KA, Chandrasekharan A, Lupitha SS, Lekshmi A, Mini M, Darvin P, Santhoshkumar TR. Real-time visualization and quantitation of cell death and cell cycle progression in 2D and 3D cultures utilizing genetically encoded probes. J Cell Biochem. 2022 Feb 2. doi: 10.1002/jcb.30222. Epub ahead of print. PMID: 35106828.
  • Jain P, Mazumder M, Pradeep KR, Viswanatha R, Pati SK, Narayana C. Polaronic Signatures in Doped and Undoped Cesium Lead Halide Perovskite Nanocrystals through a Photoinduced Raman Mode. ACS Appl Mater Interfaces. 2022 Feb 2;14(4):5567-5577. doi: 10.1021/acsami.1c20321. Epub 2022 Jan 18. PMID: 35041391.
  • Nath LR, Swetha M, Vijayakurup V, Thangarasu AK, Haritha NH, Shabna A, Aiswarya SU, Rayginia TP, Keerthana CK, Kalimuthu K, Sundaram S, Lankalapalli RS, Pillai S, Towner R, Isakov N, Anto RJ. Blockade of Uttroside B-Induced Autophagic Pro-Survival Signals Augments Its Chemotherapeutic Efficacy Against Hepatocellular Carcinoma. Front Oncol. 2022 Feb 8;12:812598. doi: 10.3389/fonc.2022.812598. PMID: 35211405; PMCID: PMC8861526.
  • Prasanna R, Babu A, Balan A, Harikumar KB (2022) The effect of caries, periodontitis and substance abuse on salivary interleukin - 6 levels. The Journal of the Indian Dental Association, XV; 19-25.
  • Kurani H, Razavipour SF, Harikumar KB, Dunworth M, Ewald AJ, Nasir A, Pearson G, van Booven D, Zhou Z, Azzam D, Wahlestedt C, Slingerland J. DOT1L is a novel cancer stem cell target for triple negative breast cancer. Clin Cancer Res. 2022 Feb 8:clincanres.1299.2021. doi: 10.1158/1078-0432.CCR-21-1299. Epub ahead of print. PMID: 35135840.
  • Parveen S, Subramanian K. Emerging Roles of Extracellular Vesicles in Pneumococcal Infections: Immunomodulators to Potential Novel Vaccine Candidates. Front Cell Infect Microbiol. 2022 Feb 14;12:836070. doi: 10.3389/fcimb.2022.836070. PMID: 35237534; PMCID: PMC8882830.
  • Salini S, Bhat SG, Naz S, Natesh R, Kumar RA, Nandicoori VK, Kurthkoti K. The error-prone polymerase DnaE2 mediates the evolution of antibiotic resistance in persister mycobacterial cells. Antimicrob Agents Chemother. 2022 Feb 14:AAC0177321. doi: 10.1128/AAC.01773-21. Epub ahead of print. PMID: 35156855.
  • Andugulapati SB, Sundararaman A, Lahiry M, Rangarajan A. AMP- activated protein kinase (AMPK) promotes breast cancer stemness and drug resistance. Dis Model Mech. 2022 Feb 23:dmm.049203. doi: 10.1242/dmm.049203. Epub ahead of print. PMID: 35195687.
  • Vini R, Rajavelu A, Sreeharshan S. 27-Hydroxycholesterol, The Estrogen Receptor Modulator, Alters DNA Methylation in Breast Cancer. Front Endocrinol (Lausanne). 2022 Mar 10;13:783823. doi: 10.3389/fendo.2022.783823. PMID: 35360070; PMCID: PMC8961300.
  • Swathy B, Banerjee M. Understanding Pharmaco-Epigenomic Response of Antipsychotic Drugs Using Genome-Wide MicroRNA Expression Profile in Liver Cell Line. Front Mol Neurosci. 2022 Mar 22;15:786632. doi: 10.3389/fnmol.2022.786632. PMID: 35392270; PMCID: PMC8980709.
  • Ghosh S, Parikh S, Nissa MU, Acharjee A, Singh A, Patwa D, Makwana P, Athalye A, Barpanda A, Laloraya M, Srivastava S, Parikh F. Semen Proteomics of COVID-19 Convalescent Men Reveals Disruption of Key Biological Pathways Relevant to Male Reproductive Function. ACS Omega. 2022 Mar 7;7(10):8601-8612. doi: 10.1021/acsomega.1c06551. PMID: 35309488; PMCID: PMC8928495.
  • Gunasekaran S, Jacob RS, Omkumar RV. Differential expression of miR-148b, miR-129-2 and miR-296 in animal models of schizophrenia-Relevance to NMDA receptor hypofunction. Neuropharmacology. 2022 Mar 8:109024. doi: 10.1016/j.neuropharm.2022.109024. Epub ahead of print. PMID: 35276119.
  • Archana, G. M., Gunasekaran, S., Jacob, R. S. and Omkumar, R. V. (2022) Role of CaMKII in mediating function and dysfunction at glutamatergic synapses. Front. Mol. Neurosci. (In press) DOI: 10.3389/fnmol.2022.855752
  • Rajam SM, Varghese PC, Dutta D. Histone Chaperones as Cardinal Players in Development. Front Cell Dev Biol. 2022 Apr 4;10:767773. doi: 10.3389/fcell.2022.767773. PMID: 35445016; PMCID: PMC9014011.
  • U A, Viswam P, Kattupalli D, Eppurathu Vasudevan S. Elucidation of transfer RNAs as stress regulating agents and the experimental strategies to conceive the functional role of tRNA-derived fragments in plants. Crit Rev Biotechnol. 2022 Apr 5:1-18. doi: 10.1080/07388551.2022.2026288. Epub ahead of print. PMID: 35382663.
  • Ravindran R, Velikkakath AKG, Narendradev ND, Chandrasekharan A, Santhoshkumar TR, Srinivasula SM. Endosomal-associated RFFL facilitates mitochondrial clearance by enhancing PRKN/parkin recruitment to mitochondria. Autophagy. 2022 Apr 3:1-14. doi: 10.1080/15548627.2022.2052460. Epub ahead of print. PMID: 35373701.
  • Kiran S, Parvathy J, Sukumaran T, Varghese J, Lakshmi S, Kumar SS, Babu A, Harikumar KB and Ragupathy L (2022). Immunomodulatory properties of D-sorbitol/D-mannitol incorporated linear step-growth Co-polymers. International Journal of Polymeric Materials and Polymeric Biomaterials (In Press).
  • Manu KA, Harikumar KB, Ishimoto T. Editorial: Targeting Pancreatic Cancer: Strategies and Hopes. Front Oncol. 2022 Mar 31;12:873682. doi: 10.3389/fonc.2022.873682. PMID: 35433449; PMCID: PMC9009413.
  • Arndt C, Bergmann R, Striese F, Merkel K, Máthé D, Loureiro LR, Mitwasi N, Kegler A, Fasslrinner F, González Soto KE, Neuber C, Berndt N, Kovács N, Szöllősi D, Hegedűs N, Tóth G, Emmermann J-P, Harikumar KB, Kovacs T, Bachmann M, Feldmann A (2022). Development and Functional Characterization of a Versatile Radio-/Immunotheranostic Tool for Prostate Cancer Management. Cancers (Basel). 2022 Apr 14;14(8):1996. doi: 10.3390/cancers14081996. PMID: 35454902; PMCID: PMC9027777.
  • Santhik Subhasingh Lupitha, Pramod Darvin, Aneesh Chandrasekharan, Shankara Narayanan Varadarajan, Soumya Jaya Divakaran, Sreekumar Easwaran, Shijulal Nelson-Sathi, Perunthottathu K Umasankar, Sara Jones, Iype Joseph, Madhavan Radhakrishna Pillai, Thankayyan Retnabai Santhoshkumar. A rapid bead-based assay for screening of SARS-CoV-2 neutralizing antibodies. Antibody Therapeutics. https://doi.org/10.1093/abt/tbac007
  • Puthumadathil N, Krishnan R S, Nair GS, Mahendran KR. Assembly of alpha-helical transmembrane pores through an intermediate state. Nanoscale. 2022 Apr 14. doi: 10.1039/d2nr00556e. Epub ahead of print. PMID: 35420118.
  • Nath AN, Retnakumar RJ, Francis A, Chhetri P, Thapa N, Chattopadhyay S. Peptic ulcer and gastric cancer: is it all in the complex host-microbiome interplay that is encoded in the genomes of 'us' and 'them'? Frontiers in Microbiology. 2022. 13. 835313.
  • Valiyamangalath Sethumadhavan D, Tiburcio M, Kanyal A, Jabeena CA, Govindaraju G, Karmodiya K, Rajavelu A. Chromodomain protein interacts with H3K9me3 and controls RBC rosette formation by regulating the expression of a subset of RIFINs in the malaria parasite. J Mol Biol. 2022 Apr 20:167601. doi: 10.1016/j.jmb.2022.167601. Epub ahead of print. PMID: 35460670.
  • Vijayan A, C L V, Kumar GSV. Dual growth factor entrapped nanoparticle enriched alginate wafer-based delivery system for suppurating wounds. Int J Biol Macromol. 2022 Mar 15;208:172-181. doi: 10.1016/j.ijbiomac.2022.03.068. Epub ahead of print. PMID: 35304195.
  • Nanditha CK, Kumar GSV. Bioactive peptides laden nano and micro-sized particles enriched ECM inspired dressing for skin regeneration in diabetic wounds. Mater Today Bio. 2022 Mar 8;14:100235. doi: 10.1016/j.mtbio.2022.100235. PMID: 35308040; PMCID: PMC8928068.
  • Zaccai NR, Kadlecova Z, Dickson VK, Korobchevskaya K, Kamenicky J, Kovtun O, Umasankar PK, Wrobel AG, Kaufman JGG, Gray SR, Qu K, Evans PR, Fritzsche M, Sroubek F, Höning S, Briggs JAG, Kelly BT, Owen DJ, Traub LM. FCHO controls AP2's initiating role in endocytosis through a PtdIns(4,5)P2-dependent switch. Sci Adv. 2022 Apr 29;8(17):eabn2018. doi: 10.1126/sciadv.abn2018. Epub 2022 Apr 29. PMID: 35486718.
  • Pammi Guru KT, Sreeja JS, Dharmapal D, Sengupta S, Basu PK. Novel Gold Nanoparticle-Based Quick Small-Exosome Isolation Technique from Serum Sample at a Low Centrifugal Force. Nanomaterials (Basel). 2022 May 13;12(10):1660. doi: 10.3390/nano12101660. PMID: 35630882; PMCID: PMC9147093.
  • Wanjale MV, Sunil Jaikumar V, Sivakumar KC, Ann Paul R, James J, Kumar GSV. Supramolecular Hydrogel Based Post-Surgical Implant System for Hydrophobic Drug Delivery Against Glioma Recurrence. Int J Nanomedicine. 2022 May 16;17:2203-2224. doi: 10.2147/IJN.S348559. PMID: 35599751; PMCID: PMC9122075.
  • Maliekal TT, Dharmapal D, Sengupta S. Tubulin Isotypes: Emerging Roles in Defining Cancer Stem Cell Niche. Front Immunol. 2022 May 26;13:876278. doi: 10.3389/fimmu.2022.876278. PMID: 35693789; PMCID: PMC9179084.
  • Swetha M, Keerthana CK, Rayginia TP, Nath LR, Haritha NH, Shabna A, Kalimuthu K, Thangarasu AK, Aiswarya SU, Jannet S, Pillai S, Harikumar KB, Sundaram S, Anto NP, Wu DH, Lankalapalli RS, Towner R, Isakov N, Deepa SS, Anto RJ. Augmented Efficacy of Uttroside B over Sorafenib in a Murine Model of Human Hepatocellular Carcinoma. Pharmaceuticals (Basel). 2022 May 22;15(5):636. doi: 10.3390/ph15050636. PMID: 35631464.
  • Vikraman D, Satheesan R, Rajendran M, Kumar NA, Johnson JB, R SK, Mahendran KR. Selective Translocation of Cyclic Sugars through Dynamic Bacterial Transporter. ACS Sens. 2022 Jun 7. doi: 10.1021/acssensors.2c00943. Epub ahead of print. PMID: 35671512.
  • Johnson BS, Krishna MB, Padmanabhan RA, Pillai SM, Jayakrishnan K, Laloraya M. Derailed peripheral circadian genes in polycystic ovary syndrome patients alters peripheral conversion of androgens synthesis. Hum Reprod. 2022 Jun 21:deac139. doi: 10.1093/humrep/deac139. Epub ahead of print. PMID: 35728080.
  • Morck MM, Bhowmik D, Pathak D, Dawood A, Spudich J, Ruppel KM. Hypertrophic cardiomyopathy mutations in the pliant and light chain-binding regions of the lever arm of human β-cardiac myosin have divergent effects on myosin function. Elife. 2022 Jun 29;11:e76805. doi: 10.7554/eLife.76805. PMID: 35767336; PMCID: PMC9242648.
  • Betcy Susan Johnson, Malini Laloraya. Polycystic ovary syndrome and immune deregulation: what do hormones want to say? Exploration of Immunology. 27 June 2022. https://doi.org/10.37349/ei.2022.00058
  • Ramamurthy T, Pragasam AK, Taylor-Brown A, Will RC, Vasudevan K, Das B, Srivastava SK, Chowdhury G, Mukhopadhyay AK, Dutta S, Veeraraghavan B, Thomson NR, Sharma NC, Nair GB, Takeda Y, Ghosh A, Dougan G, Mutreja A. Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. Nat Commun. 2022 Jul 5;13(1):3864. doi: 10.1038/s41467-022-31391-4. PMID: 35790755.
  • Aiswarya SUD, Vikas G, Haritha NH, Liju VB, Shabna A, Swetha M, Rayginia TP, Keerthana CK, Nath LR, Reshma MV, Sundaram S, Anto NP, Lankalapalli RS, Anto RJ, Bava SV. Cucurbitacin B, Purified and Characterized From the Rhizome of Corallocarpus epigaeus Exhibits Anti-Melanoma Potential. Front Oncol. 2022 Jun 8;12:903832. doi: 10.3389/fonc.2022.903832. PMID: 35756619; PMCID: PMC9213886.
  • Baral I, Varghese PC, Dutta D. Epigenetics as "conductor" in "orchestra" of pluripotent states. Cell Tissue Res. 2022 Jul 15. doi: 10.1007/s00441-022-03667-0. Epub ahead of print. PMID: 35838826.
  • Satheesh GR, Koyyappurath S, Varghese L, Thomas G. Genome and Transcriptome Sequence Resources and Effector Repertoire of Pythium myriotylum Drechsler. Mol Plant Microbe Interact. 2022 Aug;35(8):715-718. doi: 10.1094/MPMI-07-21-0165-A. Epub 2022 Jul 14. PMID: 35834413.
  • Ngashangva L, Hemdan BA, El-Liethy MA, Bachu V, Minteer SD, Goswami P. Emerging Bioanalytical Devices and Platforms for Rapid Detection of Pathogens in Environmental Samples. Micromachines (Basel). 2022 Jul 8;13(7):1083. doi: 10.3390/mi13071083. PMID: 35888900; PMCID: PMC9321031.
  • Soman A, Asha Nair S. Unfolding the cascade of SERPINA3: Inflammation to cancer. Biochim Biophys Acta Rev Cancer. 2022 Jul 16;1877(5):188760. doi: 10.1016/j.bbcan.2022.188760. Epub ahead of print. PMID: 35843512.
  • Shabna A, Antony J, Vijayakurup V, Saikia M, Liju VB, Retnakumari AP, Amrutha NA, Alex VV, Swetha M, Aiswarya SU, Jannet S, Unni US, Sundaram S, Sherin DR, Anto NP, Bava SV, Chittalakkottu S, Ran S, Anto RJ. Pharmacological attenuation of melanoma by tryptanthrin pertains to the suppression of MITF-M through MEK/ERK signaling axis. Cell Mol Life Sci. 2022 Aug 10;79(9):478. doi: 10.1007/s00018-022-04476-y. PMID: 35948813.
  • Alex, T. E., Nath, V. S., Varghese, L., Geetha, K. A., Augustine, L., Ramaswamy, V. M. and Thomas, G. Transcriptome-wide identification and transcriptional profiling reveal remarkable expression modulation of redox genes in Zingiber zerumbet against Pythium myriotylum. Physiological and Molecular Plant Pathology. https://doi.org/10.1016/j.pmpp.2022.101885
  • R.J.Retnakumar, Angitha N.Nath, G. Balakrish Nair, Santanu Chattopadhyay. Gastrointestinal microbiome in the context of Helicobacter pylori infection in stomach and gastroduodenal diseases. Progress in Molecular Biology and Translational Science https://doi.org/10.1016/bs.pmbts.2022.07.001
  • Lekshmy Srinivas,Neetha N. Vellichirammal,Indu V. Nair,Chandrasekharan M. Nair and Moinak Banerjee . Contribution from MHC-Mediated Risk in Schizophrenia Can Reflect a More Ethnic-Specific Genetic and Comorbid Background.Cells https://doi.org/10.3390/cells11172695
  • Sreeja JS, Jyothy A, Nellikka RK, Ghorai S, Riya PA, James J, Sengupta S. The centrosomal recruitment of γ -tubulin and its microtubule nucleation activity is α-fodrin guided. Cell Cycle . 2022 Sep 9:1-18. doi: 10.1080/15384101.2022.2119516. Epub ahead of print. PMID: 36082994.
  • Krishnan R S, Jana K, Shaji AH, Nair KS, Das AD, Vikraman D, Bajaj H, Kleinekathöfer U, Mahendran KR. Assembly of transmembrane pores from mirror-image peptides. Nat Commun. 2022 Sep 14;13(1):5377. doi: 10.1038/s41467-022-33155-6. PMID: 36104348; PMCID: PMC9474448.
  • Padmanabhan RA, Zyju DP, Subramaniam AG, Nautiyal J, Laloraya M. Son of sevenless 1 (SOS1), the RasGEF, interacts with ERα and STAT3 during embryo implantation. J Mol Endocrinol. 2022 Sep 1:JME-22-0089. doi: 10.1530/JME-22-0089. Epub ahead of print. PMID: 36103132.

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