Accurate and satisfactory analysis of all high risk HPV types and some of the low risks including HPV 6 and 11 antibody titers for the 2-versus 3 dose HPV vaccination clinical trial in India- Follow-up study
International Agency for Research on Cancer [IARC]- WHO
Research Summary
Our lab investigates the contribution of HPV infections in several cancers with the aim of understanding cancer aetiology and contributing to primary and secondary prevention of cancer. These objectives are achieved throughcollaborative studies, which integrate large scale epidemiologic studies (with lifestyle and environmental exposure data) with high throughput methods (e.g. multiplex HPV testing methods, large-scale targeted gene sequencing, whole exome and RNA sequencing). An important thrust area of our research includes head and neck cancerswhere we focus on biomarker discovery for oral cancer risk prediction, estimating the proportion of HPV driven cancers at each anatomic subsite, unravelling whether this proportion varies by geographic location in the country, identifying accurate markers for classification and prognosis of HPV-related cancers and providing an insight into the natural history of oral HPV infections among cancer-free healthy individuals. Another important focus of our research is in the domain of cervical cancer prevention, particularly in demonstrating short term vaccine efficacy with respect to immunogenicity and infection rates following vaccination with the quadrivalent HPV vaccine. In this context, we are also interested in identifying immune correlates of long lasting highly specific B and T cell mediated immune memory response to HPV vaccination.Our lab also manages an advanced testing facility for human papillomavirus (HPV) research that includes multiplex HPV genotyping and serology assays using the high throughput Luminex platform.
Research Programs
Human papillomavirus (HPV) related cancers are sexually transmitted diseases. HPV is known to cause cervical,vulvar, anal, penile and a subset of oropharynx cancers. While the incidence rate of oropharynx cancer is increasing in the West, primarily due to the increasing the HPV-positive subset, the status of these cancers in India remains unclear. Globally, HPV prevalence in oropharynx cancervaries dramatically. Whether India, with diverse sociodemographic features, experiences similar variability is not known.Our research program will provide accurate estimates for the HPV-related OPC subset with respect to: incidence,trends (if any) and potential geographic variability across the nation. This is a major research program funded by the Wellcome Trust (UK) India Alliance program by the Department of Biotechnology (DBT).
The recognition of HPV-related cancers in men has triggered the advocacy of male vaccination toprotect against HPV-related genital and oral cancer, particularly in settings of low vaccine uptake among women. It is clear that vaccination must precede infection in order to be effective. Prior to a meaningful discussion on cost-effectiveness of vaccinating boys or the reduction in potential cancer risk, it remains obvious that more evidence regarding the burden of infections is needed. Through a prospective population-based study, we will estimate oral HPV prevalence, incidence and clearance rates among healthy cancer-free men.This project will provide novel insights into the natural history of oral HPV infections and lead to a better understanding of natural immune responses to non-genital HPV infections in men. This is a major research program funded by the Wellcome Trust (UK) India Alliance program by the Department of Biotechnology (DBT).
Oral cancer is the most common malignancy in India for which oral potentially premalignant lesions serve as early indicators of damage. Although it has been recognized for decades that not all oral precancers progress to frank malignancies, no biomarkers exist that can identify patients with a high risk of progression. Further, the overall 5-year survival of oral cancer patients has only improved slightly over the past several decades. Treatment often requires aggressive, multimodality management that results in the loss of oro-facial function, pain, and disfigurement. At present, cancer treatment and prognosis is heavily dependent on stage. Yet, the ability of staging to predict prognosis is limited; patients with tumors of the same clinical and pathologic staging have heterogeneous response to clinical treatment, and different probability of recurrence and survival. Therefore we aim to identify and validate biomarkers of oral cancer risk prediction. This is a major research program funded by the Department of Biotechnology (DBT).
India reports the highest rate of cancers arising at the oral cavity, pharynx and larynx, grouped together as head and neck cancers. The high rate of occurrence has been attributed to the prevalence of tobacco chewing. In addition, smoking and alcohol consumption are also known to cause these cancers. Recently, human papillomavirus (HPV) infection, previously known to cause cervical, vulvar, anal and penile cancers, have been implicated in a subset particularly those arising at the oropharynx. My lab is interested in filling the existing knowledge gaps in this area by estimating the proportion of HPV driven cancers at each of these sites, identifying accurate markers for classification and prognosis of HPV-related cancers and elucidating the interactions between multiple risk factors in risk of this disease. We therefore work in research partnerships with teams comprising clinical oncologists, pathologists, biologists, and epidemiologists. All studies involving patients, tumor tissue and population studies are done through a network of collaborations with Institutes across the country.This research program is funded by the Indian Council of Medical Research (ICMR).
Bivalent and a quadrivalent HPV vaccines are currently available that can prevent infections with HPV types that cause upto 70% of cervical cancers. Since an increase in worldwide HPV vaccination, particularly in low-resource settings like India, could be facilitated if fewer than three doses of vaccine would be as effective as three doses, a multicentre, cluster-randomised trial was initiated in India. Using theadvanced human papillomavirus (HPV) testing facility in our lab, this existing program examines the short term vaccine efficacy in terms of immunogenicity and infection rates after vaccination. This program is funded by the Bill & Melinda Gates Foundation through the International Agency for Research on Cancer (IARC-WHO).
An effective virus-like particle (VLP) based prophylactic vaccine will need to induce a strong humoral and cellular immune response capable of providing long-term protection. Long term immune memory is known to be mediated through a subset of plasma cells that persist as antigen-specific memory B and T cells. Our lab is interested in characterizing long lasting highly specific HPV L1 VLP memory B cells and T cell mediated response to HPV vaccination.
Current Research Grants
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2025 2020
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2024 2019
Human papillomavirus (HPV)-related oropharyngeal cancer burdenand the natural history of oral HPV infections: an Indianperspective.
Wellcome Trust (UK) India Alliance program by the Department of Biotechnology [DBT]
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2023 2018
Biomarkers of oral cancer risk prediction
Department of Biotechnology [DBT]
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2022 2019
HPV genotyping for efficacy testing of generic qHPV vaccine development: Serum Institute of India study
Serum Institute of India